-Genomic Data Links
Protein
Hdx
UniPROBE Accession Number
UP00148
Species
Mus musculus
Domain
Homeobox
Uniprot
Q14B70
Name and Synonyms
Highly divergent homeobox
None Available
IHOP
None Available
Description
None Available
RefSeq
NP_001074018
Hdx DNA binding domain
1   KRALQDRTQF SDRDLATLKK YWDNGMTSLG SVCREKIEAV AIELNVDCEI
51  VRTWIGNRRR KYRL
JASPAR
None Available
-PBM Motif Data for Hdx
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G..GAAATCA (E.S. 0.48943)
TGATTTC..C (E.S. 0.48943)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNNDRDND
HNHYHNNNNN
Downloads
Download the zip of all Hdx PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hdx in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=148&sourceDB=uniprobe
-Hdx Datasets
Clone ID Expression Expression Method Save View
pTH3845 #1 E. coli save search
Clone pTH3845 insert sequence
1    MNLRSVFTVE QQRILQRYYE NGMTNQSKNC FQLILQCAQE TKLDFSVVRT
51   WVGNKRRKMS SKSCESGAAG TVSGTSLAAP DITVRNVVNI ARPSSQQSSW
101  TSANNDVIVT GIYSPVSSSS KQGTTKHTNT QITEAHKIPI QKAANKNDTE
151  LQLHIPVQRQ VAHCKNASVL LGEKTIILSR QTSVLNAGNS VYNHTKKSYG
201  SSPVQASEMT VPQKPSVCQR PCKIEPVGIQ RSYKPEHAGL ASHNLCGQKP
251  TIRDPCCRTQ NLEIREVFSL AVSDYPQRIL GGNSTQKPAS AEGTCLSIAM
301  ETGDAEDEYA REEELASMGA QITSYSRFYE SGNSLRAENQ STNLPGPGRN
351  LPNSQMVNIR DLSDNVLYQT RDYHLTPRTS LHTASSTMYS NTNPSRSNFS
401  PHFVSSNQLR LSQNQNNYQI SGNLSVPWIT GCSRKRALQD RTQFSDRDLA
451  TLKKYWDNGM TSLGSVCREK IEAVAIELNV DCEIVRTWIG NRRRKYRLMG
501  IEVPPPRGGP ADFSEQPE
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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