-Genomic Data Links
Protein
Pitx1
UniPROBE Accession Number
UP00153
Species
Mus musculus
Domain
Homeobox
Uniprot
P70314
Name and Synonyms
paired-like homeodomain transcription factor 1
Bft, Hindlimb expressed homeobox protein backfoot, Homeobox protein P-OTX, Pituitary homeobox 1, Pituitary OTX-related factor, Potx, P-OTX, Ptx1
IHOP
123558
Description
None Available
RefSeq
NP_035227
Pitx1 DNA binding domain
1   RRQRTHFTSQ QLQELEATFQ RNRYPDMSMR EEIAVWTNLT EPRVRVWFKN
51  RRAKWRK
JASPAR
None Available
-PBM Motif Data for Pitx1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GGGATTAA (E.S. 0.49787)
TTAATCCC (E.S. 0.49787)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNRGATTANN
NNTAATCYNN
Downloads
Download the zip of all Pitx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Pitx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=153&sourceDB=uniprobe
-Pitx1 Datasets
Clone ID Expression Expression Method Save View
pTH2312 #1 E. coli save search
Clone pTH2312 insert sequence
1   AGCGGGAEDP AKKKKQRRQR THFTSQQLQE LEATFQRNRY PDMSMREEIA
51  VWTNLTEPRV RVWFKNRRAK WRKRERNQQL DLCKGGYVPQ FSG
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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