-Genomic Data Links
Protein
Lmx1b
UniPROBE Accession Number
UP00169
Species
Mus musculus
Domain
Homeobox
Uniprot
O88609
Name and Synonyms
LIM homeobox transcription factor 1 beta
LIM/homeobox protein LMX1B, LIM-homeobox protein 1.2, LMX1.1, LMX1.2, LMX-1.2
IHOP
122547
Description
None Available
RefSeq
NP_034855
Lmx1b DNA binding domain
1   KRPRTILTTQ QRRAFKASFE VSSKPCRKVR ETLAAETGLS VRVVQVWFQN
51  QRAKMKK
JASPAR
None Available
-PBM Motif Data for Lmx1b
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49974)
TTAATTAA (E.S. 0.49974)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNDADDRN
NYHHTHNNNN
Downloads
Download the zip of all Lmx1b PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Lmx1b in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=169&sourceDB=uniprobe
-Lmx1b Datasets
Clone ID Expression Expression Method Save View
pTH3433 #1 IVT save search
Clone pTH3433 insert sequence
1   SQSKGSGDDG KDPRRPKRPR TILTTQQRRA FKASFEVSSK PCRKVRETLA
51  AETGLSVRVV QVWFQNQRAK MKKLARRHQQ QQEQQNSQRL GQE
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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