-Genomic Data Links
Protein
Msx3
UniPROBE Accession Number
UP00171
Species
Mus musculus
Domain
Homeobox
Uniprot
P70354
Name and Synonyms
homeo box, msh-like 3
Homeobox protein MSX-3, Msx-3
IHOP
122902
Description
None Available
RefSeq
NP_034966
Msx3 DNA binding domain
1   RKPRTPFTTA QLLALERKFH QKQYLSIAER AEFSSSLSLT ETQVKIWFQN
51  RRAKAKR
JASPAR
None Available
-PBM Motif Data for Msx3
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A.CAATTAA (E.S. 0.49771)
TTAATTG.T (E.S. 0.49771)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNWAATDDNN
NNHHATTWNN
Downloads
Download the zip of all Msx3 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Msx3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=171&sourceDB=uniprobe
-Msx3 Datasets
Clone ID Expression Expression Method Save View
pTH3206 #1 IVT save search
Clone pTH3206 insert sequence
1   RAPSPPPCTL RKHKTNRKPR TPFTTAQLLA LERKFHQKQY LSIAERAEFS
51  SSLSLTETQV KIWFQNRRAK AKRLQEAELE KLKLAAKPLL PAA
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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