-Genomic Data Links
Protein
Hoxd12
UniPROBE Accession Number
UP00177
Species
Mus musculus
Domain
Homeobox
Uniprot
P23812
Name and Synonyms
homeo box D12
Homeobox protein Hox-D12, Hox-4.7, Hox-5.6, Hoxd-12
IHOP
121754
Description
None Available
RefSeq
NP_032300
Hoxd12 DNA binding domain
1   RKKRKPYTKQ QIAELENEFL VNEFINRQKR KELSNRLNLS DQQVKIWFQN
51  RRMKKKR
JASPAR
None Available
-PBM Motif Data for Hoxd12
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GTCGTAAA (E.S. 0.49850)
TTTACGAC (E.S. 0.49850)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NDWWAYNDBN
NVHNRTWWHN
Downloads
Download the zip of all Hoxd12 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxd12 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=177&sourceDB=uniprobe
-Hoxd12 Datasets
Clone ID Expression Expression Method Save View
pTH3481 #1 IVT save search
Clone pTH3481 insert sequence
1   SPKPGLPWGG AAPGRARKKR KPYTKQQIAE LENEFLVNEF INRQKRKELS
51  NRLNLSDQQV KIWFQNRRMK KKRVVQREQA LALY
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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