-Genomic Data Links
Protein
Hoxd13
UniPROBE Accession Number
UP00180
Species
Mus musculus
Domain
Homeobox
Uniprot
P70217
Name and Synonyms
homeo box D13
Homeobox protein Hox-D13, Hox-4.8, spdh
IHOP
121755
Description
None Available
RefSeq
NP_032301
Hoxd13 DNA binding domain
1   RKKRVPYTKL QLKELENEYA INKFINKDKR RRISAATNLS ERQVTIWFQN
51  RRVKDKK
JASPAR
None Available
-PBM Motif Data for Hoxd13
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CAATAAAA (E.S. 0.49611)
TTTTATTG (E.S. 0.49611)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NWTHVYDNNN
NNNHRBDAWN
Downloads
Download the zip of all Hoxd13 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxd13 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=180&sourceDB=uniprobe
-Hoxd13 Datasets
Clone ID Expression Expression Method Save View
pTH2356 #1 IVT save search
Clone pTH2356 insert sequence
1   GDVALNQPDM CVYRRGRKKR VPYTKLQLKE LENEYAINKF INKDKRRRIS
51  AATNLSERQV TIWFQNRRVK DKKIVSKLKD TVS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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