-Genomic Data Links
Protein
Hoxa13
UniPROBE Accession Number
UP00183
Species
Mus musculus
Domain
Homeobox
Uniprot
PQ62424
Name and Synonyms
homeo box A13
Hd, Homeobox protein Hox-A13, Hox-1.10, MGC124020, MGC124021, MGC124022
IHOP
121726
Description
None Available
RefSeq
NP_032290
Hoxa13 DNA binding domain
1   RKKRVPYTKV QLKELEREYA TNKFITKDKR RRISATTNLS ERQVTIWFQN
51  RRVKEKK
JASPAR
None Available
-PBM Motif Data for Hoxa13
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTCGTAAA (E.S. 0.49934)
TTTACGAG (E.S. 0.49934)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NTTWAYDRNN
NNYHRTWAAN
Downloads
Download the zip of all Hoxa13 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxa13 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=183&sourceDB=uniprobe
-Hoxa13 Datasets
Clone ID Expression Expression Method Save View
pTH3126 #1 IVT save search
Clone pTH3126 insert sequence
1   PDVVSHPSDA SSYRRGRKKR VPYTKVQLKE LEREYATNKF ITKDKRRRIS
51  ATTNLSERQV TIWFQNRRVK EKKVINKLKT TS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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