-Genomic Data Links
Protein
Pbx1
UniPROBE Accession Number
UP00185
Species
Mus musculus
Domain
Homeobox
Uniprot
P41778
Name and Synonyms
pre B-cell leukemia transcription factor 1
D230003C07Rik, Homeobox protein PBX1, Pbx-1, Pre-B-cell leukemia transcription factor 1
IHOP
123407
Description
None Available
RefSeq
NP_899198
Pbx1 DNA binding domain
1   RRKRRNFNKQ ATEILNEYFY SHLSNPYPSE EAKEELAKKC GITVSQVSNW
51  FGNKRIRYKK
JASPAR
None Available
-PBM Motif Data for Pbx1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A..CATCAAT (E.S. 0.48536)
ATTGATG..T (E.S. 0.48536)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNNTCHNN
NNDGANNNNN
Downloads
Download the zip of all Pbx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Pbx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=185&sourceDB=uniprobe
-Pbx1 Datasets
Clone ID Expression Expression Method Save View
pTH3203 #1 IVT save search
Clone pTH3203 insert sequence
1   STCEAVMILR SRFLDARRKR RNFNKQATEI LNEYFYSHLS NPYPSEEAKE
51  ELAKKCGITV SQVSNWFGNK RIRYKKNIGK FQEEANIYAA KTAVTA
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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