-Genomic Data Links
Protein
Alx4
UniPROBE Accession Number
UP00187
Species
Mus musculus
Domain
Homeobox
Uniprot
O35137
Name and Synonyms
aristaless 4
ALX-4, Aristaless-like 4, Homeobox protein aristaless-like 4
IHOP
119425
Description
None Available
RefSeq
NP_031468
Alx4 DNA binding domain
1   RRNRTTFTSY QLEELEKVFQ KTHYPDVYAR EQLAMRTDLT EARVQVWFQN
51  RRAKWRK
JASPAR
None Available
-PBM Motif Data for Alx4
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49972)
TTAATTAA (E.S. 0.49972)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHAATTANN
NNTAATTDNN
Downloads
Download the zip of all Alx4 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Alx4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=187&sourceDB=uniprobe
-Alx4 Datasets
Clone ID Expression Expression Method Save View
pTH1744 #1 IVT save search
Clone pTH1744 insert sequence
1   PSPLEKTDSE SNKGKKRRNR TTFTSYQLEE LEKVFQKTHY PDVYAREQLA
51  MRTDLTEARV QVWFQNRRAK WRKRERFGQM QQVRTHFSTA YEL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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