-Genomic Data Links
Protein
Six1
UniPROBE Accession Number
UP00192
Species
Mus musculus
Domain
Homeobox
Uniprot
Q62231
Name and Synonyms
sine oculis-related homeobox 1 homolog (Drosophila)
Homeobox protein SIX1, Sine oculis homeobox homolog 1
IHOP
124633
Description
None Available
RefSeq
NP_033215
Six1 DNA binding domain
1   ETSYCFKEKS RGVLREWYAH NPYPSPREKR ELAEATGLTT TQVSNWFKNR
51  RQRDRA
JASPAR
None Available
-PBM Motif Data for Six1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GGGTATCA (E.S. 0.49667)
TGATACCC (E.S. 0.49667)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNDATMYNNN
NNNRKATHNN
Downloads
Download the zip of all Six1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Six1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=192&sourceDB=uniprobe
-Six1 Datasets
Clone ID Expression Expression Method Save View
pTH935 #1 E. coli save search
Clone pTH935 insert sequence
1   RVRRKFPLPR TIWDGEETSY CFKEKSRGVL REWYAHNPYP SPREKRELAE
51  ATGLTTTQVS NWFKNRRQRD RAAEAKEREN TENNNSSSNK QN
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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