-Genomic Data Links
Protein
Hoxa4
UniPROBE Accession Number
UP00196
Species
Mus musculus
Domain
Homeobox
Uniprot
P06798
Name and Synonyms
homeo box A4
AV206827, Homeobox protein Hox-A4, Hox-1.4, Hoxa-4, MGC130055, MH-3
IHOP
121729
Description
None Available
RefSeq
NP_032291
Hoxa4 DNA binding domain
1   KRSRTAYTRQ QVLELEKEFH FNRYLTRRRR IEIAHTLCLS ERQVKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxa4
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49738)
TTAATTAA (E.S. 0.49738)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHNATTWNN
NNWAATNDNN
Downloads
Download the zip of all Hoxa4 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxa4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=196&sourceDB=uniprobe
-Hoxa4 Datasets
Clone ID Expression Expression Method Save View
pTH3426 #1 E. coli save search
Clone pTH3426 insert sequence
1   KIHVSAVNSS YNGGEPKRSR TAYTRQQVLE LEKEFHFNRY LTRRRRIEIA
51  HTLCLSERQV KIWFQNRRMK WKKDHKLPNT KMRSSNTASA PAG
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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