-Genomic Data Links
Protein
Cphx
UniPROBE Accession Number
UP00198
Species
Mus musculus
Domain
Homeobox
Uniprot
Q8BX39
Name and Synonyms
cytoplasmic polyadenylated homeobox
Homeobox protein ESO1
IHOP
None Available
Description
None Available
RefSeq
NP_780551
Cphx DNA binding domain
1   SKPRHKFSRD ELKRLKQEFA YAPYPDFTTK DELARQFQCE VSVIDNWFQN
51  KRARLAP
JASPAR
None Available
-PBM Motif Data for Cphx
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GATC..ATCA (E.S. 0.49869)
TGAT..GATC (E.S. 0.49869)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
WKANNNNNNN
NNNNNNNTMW
Downloads
Download the zip of all Cphx PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Cphx in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=198&sourceDB=uniprobe
-Cphx Datasets
Clone ID Expression Expression Method Save View
pTH3484 #1 IVT save search
Clone pTH3484 insert sequence
1   TKDNRSKARK RYGSRNSKPR HKFSRDELKR LKQEFAYAPY PDFTTKDELA
51  RQFQCEVSVI DNWFQNKRAR LAPELKSKIS AMRRMRRCQD YMR
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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