-Genomic Data Links
Protein
Six4
UniPROBE Accession Number
UP00199
Species
Mus musculus
Domain
Homeobox
Uniprot
Q61321
Name and Synonyms
sine oculis-related homeobox 4 homolog (Drosophila)
AI047561, Arec3, AREC3, Homeobox protein SIX4, Sine oculis homeobox homolog 4, Skeletal muscle-specific ARE binding protein AREC3, TrexBF
IHOP
124636
Description
None Available
RefSeq
NP_035512
Six4 DNA binding domain
1   GEETVYCFKE KSRNALKELY KQNRYPSPAE KRHLAKITGL SLTQVSNWFK
51  NRRQRDRN
JASPAR
None Available
-PBM Motif Data for Six4
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
ATGACACC (E.S. 0.49417)
GGTGTCAT (E.S. 0.49417)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNDKVTHNN
NNDABMHNNN
Downloads
Download the zip of all Six4 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Six4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=199&sourceDB=uniprobe
-Six4 Datasets
Clone ID Expression Expression Method Save View
pTH2860 #1 IVT save search
Clone pTH2860 insert sequence
1   YRLRRKFPLP RTIWDGEETV YCFKEKSRNA LKELYKQNRY PSPAEKRHLA
51  KITGLSLTQV SNWFKNRRQR DRNPSETQSK SESDGNPSTE DES
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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