-Genomic Data Links
Protein
Pknox1
UniPROBE Accession Number
UP00203
Species
Mus musculus
Domain
Homeobox
Uniprot
O70477
Name and Synonyms
Pbx/knotted 1 homeobox
D17Wsu76e, Homeobox protein PKNOX1, PBX/knotted homeobox 1, PREP1
IHOP
123584
Description
None Available
RefSeq
NP_057879
Pknox1 DNA binding domain
1   KNKRGVLPKH ATNVMRSWLF QHIGHPYPTE DEKKQIAAQT NLTLLQVNNW
51  FINARRRILQ
JASPAR
None Available
-PBM Motif Data for Pknox1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A.CTGTCAA (E.S. 0.49806)
TTGACAG.T (E.S. 0.49806)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHGACRNNN
NNNYGTCDNN
Downloads
Download the zip of all Pknox1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Pknox1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=203&sourceDB=uniprobe
-Pknox1 Datasets
Clone ID Expression Expression Method Save View
pTH2364 #1 E. coli save search
Clone pTH2364 insert sequence
1   QLNQDLSILH QEDGSSKNKR GVLPKHATNV MRSWLFQHIG HPYPTEDEKK
51  QIAAQTNLTL LQVNNWFINA RRRILQPMLD SSCSETPKTK KKPAQN
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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