-Genomic Data Links
Protein
Pknox2
UniPROBE Accession Number
UP00205
Species
Mus musculus
Domain
Homeobox
Uniprot
Q8BG99
Name and Synonyms
Pbx/knotted 1 homeobox 2
D230005H23Rik, Prep2
IHOP
151259
Description
None Available
RefSeq
NP_683752
Pknox2 DNA binding domain
1   KNKRGVLPKH ATNIMRSWLF QHLMHPYPTE DEKRQIAAQT NLTLLQVNNW
51  FINARRRILQ
JASPAR
None Available
-PBM Motif Data for Pknox2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
ACCTGTCA (E.S. 0.49819)
TGACAGGT (E.S. 0.49819)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYGTCNNN
NNNGACRNNN
Downloads
Download the zip of all Pknox2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Pknox2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=205&sourceDB=uniprobe
-Pknox2 Datasets
Clone ID Expression Expression Method Save View
pTH3077 #1 E. coli save search
Clone pTH3077 insert sequence
1   VNLDLTSLLD NEDKKSKNKR GVLPKHATNI MRSWLFQHLM HPYPTEDEKR
51  QIAAQTNLTL LQVNNWFINA RRRILQPMLD ASNPDPAPKA KKIKSQ
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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