-Genomic Data Links
Protein
Hoxb9
UniPROBE Accession Number
UP00207
Species
Mus musculus
Domain
Homeobox
Uniprot
P20615
Name and Synonyms
homeo box B9
Homeobox protein Hox-B9, Hox-2.5, Hoxb-9, MGC124051, MGC124052, MGC124053, MGC124054
IHOP
121743
Description
None Available
RefSeq
NP_032296
Hoxb9 DNA binding domain
1   RKKRCPYTKY QTLELEKEFL FNMYLTRDRR HEVARLLNLS ERQVKIWFQN
51  RRMKMKK
JASPAR
None Available
-PBM Motif Data for Hoxb9
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GC.ATAAAA (E.S. 0.49657)
TTTTAT.GC (E.S. 0.49657)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NWTWAYDDNN
NNHHRTWAWN
Downloads
Download the zip of all Hoxb9 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxb9 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=207&sourceDB=uniprobe
-Hoxb9 Datasets
Clone ID Expression Expression Method Save View
pTH3413 #1 E. coli save search
Clone pTH3413 insert sequence
1   PGQTNPSANW LHARSSRKKR CPYTKYQTLE LEKEFLFNMY LTRDRRHEVA
51  RLLNLSERQV KIWFQNRRMK MKKMNNGAGK E
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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