-Genomic Data Links
Protein
Cart1
UniPROBE Accession Number
UP00209
Species
Mus musculus
Domain
Homeobox
Uniprot
Q8C8B0
Name and Synonyms
cartilage homeo protein 1
AI314867, C130005I02, CART-1, Cartilage homeoprotein 1
IHOP
152165
Description
None Available
RefSeq
NP_766141
Cart1 DNA binding domain
1   RRHRTTFTSL QLEELEKVFQ KTHYPDVYVR EQLALRTELT EARVQVWFQN
51  RRAKWRK
JASPAR
None Available
-PBM Motif Data for Cart1
Primary Motif (clone pTH997 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49865)
TTAATTAA (E.S. 0.49865)
Primary Motif (clone pTH997 )  (BEEML-PBM)
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Primary PWM
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Consensus
NNTAATTDNN
NNHAATTANN
Primary Motif (clone pTH1275 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49949)
TTAATTAA (E.S. 0.49949)
Primary Motif (clone pTH1275 )  (BEEML-PBM)
Image Not Available. We apologize for the inconvenience.
Primary PWM
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Consensus
NNTAATDDNN
NNHHATTANN
Downloads
Download the zip of all Cart1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Cart1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=209&sourceDB=uniprobe
-Cart1 Datasets
Clone ID Expression Expression Method Save View
pTH997 #1 IVT save search
pTH1275 #1 IVT save search
Clone pTH997 insert sequence
1    DELGDKCDSN VSSSKKRRHR TTFTSLQLEE LEKVFQKTHY PDVYVREQLA
51   LRTELTEARV QVWFQNRRAK WRKRERYGQI QQAKSHFAAT YDISVLPRTD
101  SYPQIQNNLW AGNASGGSVV TSCMLPRDAS SCMT
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


Clone pTH1275 insert sequence
1   DELGDKCDSN VSSSKKRRHR TTFTSLQLEE LEKVFQKTHY PDVYVREQLA
51  LRTELTEARV QVWFQNRRAK WRKRERYGQI QQAKSHFAAT YDI
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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