-Genomic Data Links
Protein
Lhx5
UniPROBE Accession Number
UP00212
Species
Mus musculus
Domain
Homeobox
Uniprot
P61375
Name and Synonyms
LIM homeobox protein 5
LIM/homeobox protein Lhx5
IHOP
122522
Description
None Available
RefSeq
NP_032525
Lhx5 DNA binding domain
1   RGPRTTIKAK QLETLKAAFA ATPKPTRHIR EQLAQETGLN MRVIQVWFQN
51  RRSKERR
JASPAR
None Available
-PBM Motif Data for Lhx5
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49936)
TTAATTAA (E.S. 0.49936)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYHATTAN
NTAATDRNNN
Downloads
Download the zip of all Lhx5 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Lhx5 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=212&sourceDB=uniprobe
-Lhx5 Datasets
Clone ID Expression Expression Method Save View
pTH2279 #1 IVT save search
Clone pTH2279 insert sequence
1   ETANNENEEQ NSGTKRRGPR TTIKAKQLET LKAAFAATPK PTRHIREQLA
51  QETGLNMRVI QVWFQNRRSK ERRMKQLSAL GARRHAFFRS PRR
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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