-Genomic Data Links
Protein
Hoxa9
UniPROBE Accession Number
UP00213
Species
Mus musculus
Domain
Homeobox
Uniprot
P09631
Name and Synonyms
homeo box A9
D6a9, Homeobox protein Hox-A9, Hox-1.7, Hoxa-9
IHOP
121733
Description
None Available
RefSeq
NP_034586
Hoxa9 DNA binding domain
1   RKKRCPYTKH QTLELEKEFL FNMYLTRDRR YEVARLLNLT ERQVKIWFQN
51  RRMKMKK
JASPAR
None Available
-PBM Motif Data for Hoxa9
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.CATAAAA (E.S. 0.49084)
TTTTATG.C (E.S. 0.49084)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNRWHNNN
NNNDWYNNNN
Downloads
Download the zip of all Hoxa9 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxa9 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=213&sourceDB=uniprobe
-Hoxa9 Datasets
Clone ID Expression Expression Method Save View
pTH2622 #1 E. coli save search
Clone pTH2622 insert sequence
1   IDPNNPAANW LHARSTRKKR CPYTKHQTLE LEKEFLFNMY LTRDRRYEVA
51  RLLNLTERQV KIWFQNRRMK MKKINKDRAK DE
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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