-Genomic Data Links
Protein
Hoxb5
UniPROBE Accession Number
UP00214
Species
Mus musculus
Domain
Homeobox
Uniprot
P09079
Name and Synonyms
homeo box B5
AI385717, H24.1, Homeobox protein Hox-B5, Hox-2.1, Hoxb-5, MU-1
IHOP
121739
Description
None Available
RefSeq
NP_032294
Hoxb5 DNA binding domain
1   KRARTAYTRY QTLELEKEFH FNRYLTRRRR IEIAHALCLS ERQIKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxb5
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.TAATTA.C (E.S. 0.49771)
G.TAATTA.C (E.S. 0.49771)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHNWTHHNN
NNDDAWNDNN
Downloads
Download the zip of all Hoxb5 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxb5 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=214&sourceDB=uniprobe
-Hoxb5 Datasets
Clone ID Expression Expression Method Save View
pTH3122 #1 E. coli save search
Clone pTH3122 insert sequence
1   WMRKLHISHD MTGPDGKRAR TAYTRYQTLE LEKEFHFNRY LTRRRRIEIA
51  HALCLSERQI KIWFQNRRMK WKKDNKLKSM SLATAGSAFQ P
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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