Protein Details

-Genomic Data				Links
Protein Cutl1	UniPROBE Accession Number UP00219	Species Mus musculus	Domain Homeobox	Uniprot P70403
Name and Synonyms cut-like 1 (Drosophila) AA407197, CCAAT displacement protein, CDP, Cux, Cux1, Cux-1, Homeobox protein cut-like 1, Homeobox protein Cux, Kiaa4047, KIAA4047, MGC102214, mKIAA4047, Phox2, Protein CASP				IHOP 120329
Description None Available				RefSeq NP_941004
Cutl1 DNA binding domain `1 KKPRVVLAPE EKEALKRAYQ QKPYPSPKTI EELATQLNLK TSTVINWFHN 51 YRSRIRR`				JASPAR None Available

-PBM Motif Data for Cutl1
Primary Motif (clone pTH3494 , expression 1 ) (Seed-and-Wobble)				Primary PWM View Save
				Top Kmer G.TTGATCA (E.S. 0.48966) TGATCAA.C (E.S. 0.48966)
Primary Motif (clone pTH3494 , expression 2 ) (Seed-and-Wobble)				Primary PWM View Save
				Top Kmer TGAT.ATCA (E.S. 0.48867) TGAT.ATCA (E.S. 0.48867)
Primary Motif (clone pTH3494 ) (BEEML-PBM)				Primary PWM View
Primary Motif (clone pTH3494 ) (BEEML-PBM)				Consensus NNHDHYHNNN NNNDRDHDNN
Downloads Download the zip of all Cutl1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape This link will take you to the corresponding entry for Cutl1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=219&sourceDB=uniprobe

-Cutl1 Datasets
Clone ID	Expression	Expression Method	Save	View
pTH3494	#1	E. coli
pTH3494	#2	E. coli
Clone pTH3494 insert sequence `1 GIDYSQGASP QPQHQLKKPR VVLAPEEKEA LKRAYQQKPY PSPKTIEELA 51 TQLNLKTSTV INWFHNYRSR IRRELFIEEI QAGSQGQAGA SDS`
References `Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008`

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