-Genomic Data Links
Protein
Phox2a
UniPROBE Accession Number
UP00221
Species
Mus musculus
Domain
Homeobox
Uniprot
Q62066
Name and Synonyms
paired-like homeobox 2a
Aristaless homeobox protein homolog, Arix, Paired-like homeobox 2A, Paired mesoderm homeobox protein 2A, Phox2, PHOX2A homeodomain protein, Pmx2, Pmx2a
IHOP
119548
Description
None Available
RefSeq
NP_032913
Phox2a DNA binding domain
1   RRIRTTFTSA QLKELERVFA ETHYPDIYTR EELALKIDLT EARVQVWFQN
51  RRAKFRK
JASPAR
None Available
-PBM Motif Data for Phox2a
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A.TAATTAG (E.S. 0.49722)
CTAATTA.T (E.S. 0.49722)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNWRATNNNN
NNNNATYWNN
Downloads
Download the zip of all Phox2a PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Phox2a in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=221&sourceDB=uniprobe
-Phox2a Datasets
Clone ID Expression Expression Method Save View
pTH3947 #1 IVT save search
Clone pTH3947 insert sequence
1   YKFFPEPSGL HEKRKQRRIR TTFTSAQLKE LERVFAETHY PDIYTREELA
51  LKIDLTEARV QVWFQNRRAK FRKQERAASA KGAAGATGAK KGE
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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