-Genomic Data Links
Protein
Pax6
UniPROBE Accession Number
UP00224
Species
Mus musculus
Domain
Homeobox, PAX
Uniprot
P63015
Name and Synonyms
paired box gene 6
1500038E17Rik, AEY11, Dey, Dickie's small eye, Gsfaey11, Oculorhombin, Paired box protein Pax-6, Pax-6, Sey
IHOP
123403
Description
None Available
RefSeq
NP_038655
Pax6 DNA binding domain
1   QRNRTSFTQE QIEALEKEFE RTHYPDVFAR ERLAAKIDLP EARIQVWFSN
51  RRAKWRR
JASPAR
MA0069
-PBM Motif Data for Pax6
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A.TAATTA.T (E.S. 0.48714)
A.TAATTA.T (E.S. 0.48714)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNNNNNNN
NNNNNNNNNN
Downloads
Download the zip of all Pax6 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Pax6 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=224&sourceDB=uniprobe
-Pax6 Datasets
Clone ID Expression Expression Method Save View
pTH3838 #1 E. coli save search
Clone pTH3838 insert sequence
1    MQNSHSGVNQ LGGVFVNGRP LPDSTRQKIV ELAHSGARPC DISRILQVSN
51   GCVSKILGRY YETGSIRPRA IGGSKPRVAT PEVVSKIAQY KRECPSIFAW
101  EIRDRLLSEG VCTNDNIPSV SSINRVLRNL ASEKQQMGAD GMYDKLRMLN
151  GQTGSWGTRP GWYPGTSVPG QPTQDGCQQQ EGGGENTNSI SSNGEDSDEA
201  QMRLQLKRKL QRNRTSFTQE QIEALEKEFE RTHYPDVFAR ERLAAKIDLP
251  EARIQVWFSN RRAKWRREEK LRNQRRQASN TPSHIPISSS FSTSVYQPIP
301  QPTTPVSSFT SGSMLGRTDT ALTNTYSALP PMPSFTMANN LPMQPPVPSQ
351  TSSYSCMLPT SPSVNGRSYD TYTPPHMQTH MNSQPMGTSG TTSTGLISPG
401  VSVPVQVPGS EPDMSQYWPR LQ
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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