-Genomic Data Links
Protein
Nkx2-2
UniPROBE Accession Number
UP00231
Species
Mus musculus
Domain
Homeobox
Uniprot
P42586
Name and Synonyms
NK2 transcription factor related, locus 2 (Drosophila)
Homeobox protein NK-2 homolog B, Homeobox protein Nkx-2.2, Nkx2.2, Nkx-2.2, Nkx2b, tinman
IHOP
123143
Description
None Available
RefSeq
NP_035049
Nkx2-2 DNA binding domain
1   RKRRVLFSKA QTYELERRFR QQRYLSAPER EHLASLIRLT PTQVKIWFQN
51  HRYKMKR
JASPAR
None Available
-PBM Motif Data for Nkx2-2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CCACTTGA (E.S. 0.49841)
TCAAGTGG (E.S. 0.49841)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNRAGDRNN
NNYHCTYNNN
Downloads
Download the zip of all Nkx2-2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Nkx2-2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=231&sourceDB=uniprobe
-Nkx2-2 Datasets
Clone ID Expression Expression Method Save View
pTH2823 #1 IVT save search
Clone pTH2823 insert sequence
1   DNDKETQGGG GDAGKKRKRR VLFSKAQTYE LERRFRQQRY LSAPEREHLA
51  SLIRLTPTQV KIWFQNHRYK MKRARAEKGM EVTPLPSPRR VAV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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