-Genomic Data Links
Protein
Msx1
UniPROBE Accession Number
UP00234
Species
Mus musculus
Domain
Homeobox
Uniprot
P13297
Name and Synonyms
homeo box, msh-like 1
AA675338, AI324650, Homeobox protein MSX-1, Hox7, Hox-7, Hox7.1, Hox-7.1, msh, Msh homeobox 1-like protein, muscle-segment homeobox
IHOP
122900
Description
None Available
RefSeq
NP_034965
Msx1 DNA binding domain
1   RKPRTPFTTA QLLALERKFR QKQYLSIAER AEFSSSLSLT ETQVKIWFQN
51  RRAKAKR
JASPAR
None Available
-PBM Motif Data for Msx1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
ACTAATTA (E.S. 0.49663)
TAATTAGT (E.S. 0.49663)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHNATHDNN
NNHDATNDNN
Downloads
Download the zip of all Msx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Msx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=234&sourceDB=uniprobe
-Msx1 Datasets
Clone ID Expression Expression Method Save View
pTH3031 #1 E. coli save search
Clone pTH3031 insert sequence
1   RRLSPPACTL RKHKTNRKPR TPFTTAQLLA LERKFRQKQY LSIAERAEFS
51  SSLSLTETQV KIWFQNRRAK AKRLQEAELE KLKMAAKPML PPA
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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