-Genomic Data Links
Protein
Irx2
UniPROBE Accession Number
UP00236
Species
Mus musculus
Domain
Homeobox
Uniprot
P81066
Name and Synonyms
Iroquois related homeobox 2 (Drosophila)
Homeodomain protein IRXA2, Iroquois-class homeodomain protein IRX-2, Iroquois homeobox protein 2, IRX6, Irxa2, MGC103290
IHOP
122154
Description
None Available
RefSeq
NP_034704
Irx2 DNA binding domain
1   PAYRKNATRD ATATLKAWLN EHRKNPYPTK GEKIMLAIIT KMTLTQVSTW
51  FANARRRLKK
JASPAR
None Available
-PBM Motif Data for Irx2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TACATGTA (E.S. 0.49649)
TACATGTA (E.S. 0.49649)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNDTGTHNN
NNDACAHNNN
Downloads
Download the zip of all Irx2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Irx2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=236&sourceDB=uniprobe
-Irx2 Datasets
Clone ID Expression Expression Method Save View
pTH900 #1 E. coli save search
Clone pTH900 insert sequence
1   SYHPYGSAAY PYQLNDPAYR KNATRDATAT LKAWLNEHRK NPYPTKGEKI
51  MLAIITKMTL TQVSTWFANA RRRLKKENKM TWAPRNKSED EDEDEG
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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