-Genomic Data Links
Protein
Otp
UniPROBE Accession Number
UP00237
Species
Mus musculus
Domain
Homeobox
Uniprot
O09113
Name and Synonyms
orthopedia homolog (Drosophila)
Homeobox protein orthopediaÂ
IHOP
123360
Description
None Available
RefSeq
NP_035151
Otp DNA binding domain
1   KRHRTRFTPA QLNELERSFA KTHYPDIFMR EELALRIGLT ESRVQVWFQN
51  RRAKWKK
JASPAR
None Available
-PBM Motif Data for Otp
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49976)
TTAATTAA (E.S. 0.49976)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHNATTANN
NNTAATNDNN
Downloads
Download the zip of all Otp PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Otp in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=237&sourceDB=uniprobe
-Otp Datasets
Clone ID Expression Expression Method Save View
pTH3496 #1 IVT save search
Clone pTH3496 insert sequence
1   GPNPSQAGQQ QGQQKQKRHR TRFTPAQLNE LERSFAKTHY PDIFMREELA
51  LRIGLTESRV QVWFQNRRAK WKKRKKTTNV FRAPGTLLPT PGL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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