-Genomic Data Links
Protein
Hoxd3
UniPROBE Accession Number
UP00241
Species
Mus musculus
Domain
Homeobox
Uniprot
P09027
Name and Synonyms
homeo box D3
Homeobox protein Hox-D3, Hox-4.1, Hox-5.5, Hoxd-3, MH-19
IHOP
121756
Description
M.musculus Hoxd-3 mRNA
RefSeq
NP_034598
Hoxd3 DNA binding domain
1   KRVRTAYTSA QLVELEKEFH FNRYLCRPRR VEMANLLNLT ERQIKIWFQN
51  RRMKYKK
JASPAR
None Available
-PBM Motif Data for Hoxd3
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.TAATTA.C (E.S. 0.49731)
G.TAATTA.C (E.S. 0.49731)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHNATTANN
NNTAATNDNN
Downloads
Download the zip of all Hoxd3 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxd3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=241&sourceDB=uniprobe
-Hoxd3 Datasets
Clone ID Expression Expression Method Save View
pTH1742 #1 E. coli save search
Clone pTH1742 insert sequence
1   TSGENCEDKS PPGPASKRVR TAYTSAQLVE LEKEFHFNRY LCRPRRVEMA
51  NLLNLTERQI KIWFQNRRMK YKKDQKAKGI LHSPAGQSPE RSP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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