-Genomic Data Links
Protein
Hoxc8
UniPROBE Accession Number
UP00242
Species
Mus musculus
Domain
Homeobox
Uniprot
P09025
Name and Synonyms
homeo box C8
D130011F21Rik, Homeobox protein Hox-C8, Hox-3.1, Hoxc-8, M31
IHOP
121749
Description
None Available
RefSeq
NP_034596
Hoxc8 DNA binding domain
1   RSGRQTYSRY QTLELEKEFL FNPYLTRKRR IEVSHALGLT ERQVKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxc8
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.TAATTA.C (E.S. 0.49654)
G.TAATTA.C (E.S. 0.49654)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNRWWNNN
NNNWWYNNNN
Downloads
Download the zip of all Hoxc8 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxc8 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=242&sourceDB=uniprobe
-Hoxc8 Datasets
Clone ID Expression Expression Method Save View
pTH3429 #1 IVT save search
Clone pTH3429 insert sequence
1   SPSLMFPWMR PHAPGRRSGR QTYSRYQTLE LEKEFLFNPY LTRKRRIEVS
51  HALGLTERQV KIWFQNRRMK WKKENNKDKL PGARDEEKVE EEG
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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