-Genomic Data Links
Protein
Hoxa11
UniPROBE Accession Number
UP00246
Species
Mus musculus
Domain
Homeobox
Uniprot
P31311
Name and Synonyms
homeo box A11
Homeobox protein Hox-A11, Hox-1.9, Hoxa-11
IHOP
121724
Description
None Available
RefSeq
NP_034580
Hoxa11 DNA binding domain
1   RKKRCPYTKY QIRELEREFF FSVYINKEKR LQLSRMLNLT DRQVKIWFQN
51  RRMKEKK
JASPAR
None Available
-PBM Motif Data for Hoxa11
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GTCGTAAA (E.S. 0.49739)
TTTACGAC (E.S. 0.49739)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNRHWNNN
NNNWDYNNNN
Downloads
Download the zip of all Hoxa11 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxa11 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=246&sourceDB=uniprobe
-Hoxa11 Datasets
Clone ID Expression Expression Method Save View
pTH2218 #1 IVT save search
Clone pTH2218 insert sequence
1   SGHTEDKAGG SGGQRTRKKR CPYTKYQIRE LEREFFFSVY INKEKRLQLS
51  RMLNLTDRQV KIWFQNRRMK EKKINRDRLQ YYSANPLL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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