-Genomic Data Links
Protein
Pax4
UniPROBE Accession Number
UP00247
Species
Mus musculus
Domain
Homeobox, PAX
Uniprot
P32115
Name and Synonyms
paired box gene 4
Paired box protein Pax-4, Pax-4
IHOP
123401
Description
None Available
RefSeq
NP_035168
Pax4 DNA binding domain
1   HRNRTIFSPG QAEALEKEFQ RGQYPDSVAR GKLAAATSLP EDTVRVWFSN
51  RRAKWRR
JASPAR
MA0068
-PBM Motif Data for Pax4
Primary Motif  (Seed-and-Wobble)
Image Not Available. We apologize for the inconvenience.
Primary PWM
View       Save
Top Kmer
CTAATTAG (E.S. 0.49830)
CTAATTAG (E.S. 0.49830)
Primary Motif  (BEEML-PBM)
Image Not Available. We apologize for the inconvenience.
Primary PWM
View
Consensus
NNNNATTANN
NNTAATNNNN
Downloads
Download the zip of all Pax4 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Pax4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=247&sourceDB=uniprobe
-Pax4 Datasets
Clone ID Expression Expression Method Save View
pTH3989 #1 E. coli save search
Clone pTH3989 insert sequence
1    QQDGLSSVNQ LGGLFVNGRP LPLDTRQQIV QLAIRGMRPC DISRSLKVSN
51   GCVSKILGRY YRTGVLEPKC IGGSKPRLAT PAVVARIAQL KDEYPALFAW
101  EIQHQLCTEG LCTQDKAPSV SSINRVLRAL QEDQSLHWTQ LRSPAVLAPV
151  LPSPHSNCGA PRGPHPGTSH RNRTIFSPGQ AEALEKEFQR GQYPDSVARG
201  KLAAATSLPE DTVRVWFSNR RAKWRRQEKL KWEAQLPGAS QDLTVP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


Supported Browsers:IE 7.0.6001.18000, Firefox 3.5.11, Google Chrome 5.0.375.125 beta