-Genomic Data Links
Protein
Nkx2-5
UniPROBE Accession Number
UP00249
Species
Mus musculus
Domain
Homeobox
Uniprot
P42582
Name and Synonyms
NK2 transcription factor related, locus 5 (Drosophila)
Cardiac-specific homeobox, Csx, Homeobox protein CSX, Homeobox protein NK-2 homolog E, Homeobox protein Nkx-2.5, Nkx2.5, Nkx-2.5, Nkx2e, tinman
IHOP
123145
Description
None Available
RefSeq
NP_032726
Nkx2-5 DNA binding domain
1   RKPRVLFSQA QVYELERRFK QQRYLSAPER DQLASVLKLT STQVKIWFQN
51  RRYKCKR
JASPAR
MA0063
-PBM Motif Data for Nkx2-5
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A.CCACTT.A (E.S. 0.49656)
T.AAGTGG.T (E.S. 0.49656)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNVYHCTYNN
NNRAGDRBNN
Downloads
Download the zip of all Nkx2-5 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Nkx2-5 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=249&sourceDB=uniprobe
-Nkx2-5 Datasets
Clone ID Expression Expression Method Save View
pTH3436 #1 E. coli save search
Clone pTH3436 insert sequence
1   DKAETDGAER PRARRRRKPR VLFSQAQVYE LERRFKQQRY LSAPERDQLA
51  SVLKLTSTQV KIWFQNRRYK CKRQRQDQTL ELLGPPPPPA RRI
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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