-Genomic Data Links
Protein
Lhx6
UniPROBE Accession Number
UP00256
Species
Mus musculus
Domain
Homeobox
Uniprot
Q9R1R0
Name and Synonyms
LIM homeobox protein 6
Lhx6.1, LIM/homeobox protein Lhx6, LIM/homeobox protein Lhx6.1
IHOP
122523
Description
None Available
RefSeq
NP_032526
Lhx6 DNA binding domain
1   KRARTSFTAE QLQVMQAQFA QDNNPDAQTL QKLADMTGLS RRVIQVWFQN
51  CRARHKK
JASPAR
None Available
-PBM Motif Data for Lhx6
Primary Motif (clone pTH2272 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49841)
CTAATTAG (E.S. 0.49841)
Primary Motif (clone pTH2272 )  (BEEML-PBM)
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Primary PWM
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Consensus
NNYAATYANN
NNTRATTRNN
Primary Motif (clone pTH3432 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49672)
CTAATTAG (E.S. 0.49672)
Primary Motif (clone pTH3432 )  (BEEML-PBM)
Image Not Available. We apologize for the inconvenience.
Primary PWM
View
Consensus
NNTRATTRNN
NNYAATYANN
Downloads
Download the zip of all Lhx6 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Lhx6 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=256&sourceDB=uniprobe
-Lhx6 Datasets
Clone ID Expression Expression Method Save View
pTH2272 #1 IVT save search
pTH3432 #1 E. coli save search
Clone pTH2272 insert sequence
1   LEGAVPSEQD SQPKPAKRAR TSFTAEQLQV MQAQFAQDNN PDAQTLQKLA
51  DMTGLSRRVI QVWFQNCRAR HKKHTPQHPV PPSGAPPTRL PSA
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


Clone pTH3432 insert sequence
1   LEGAVPSEQD SQPKPAKRAR TSFTAEQLQV MQAQFAQDNN PDAQTLQKLA
51  DMTGLSRRVI QVWFQNCRAR HKKHTPQHPV RPLGPPTRLP SAL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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