-Genomic Data Links
Protein
Hoxb6
UniPROBE Accession Number
UP00259
Species
Mus musculus
Domain
Homeobox
Uniprot
P09023
Name and Synonyms
homeo box B6
Homeobox protein Hox-B6, Hox-2.2, Hoxb-6, MH-22A
IHOP
121740
Description
None Available
RefSeq
NP_032295
Hoxb6 DNA binding domain
1   RRGRQTYTRY QTLELEKEFH YNRYLTRRRR IEIAHALCLT ERQIKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxb6
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.TAATTA.C (E.S. 0.49191)
G.TAATTA.C (E.S. 0.49191)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNNNNNNN
NNNNNNNNNN
Downloads
Download the zip of all Hoxb6 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxb6 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=259&sourceDB=uniprobe
-Hoxb6 Datasets
Clone ID Expression Expression Method Save View
pTH3428 #1 IVT save search
Clone pTH3428 insert sequence
1   MQRMNSCNSS SFGPSGRRGR QTYTRYQTLE LEKEFHYNRY LTRRRRIEIA
51  HALCLTERQI KIWFQNRRMK WKKESKLLSA SQLSAEEEEE KPA
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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