-Genomic Data Links
Protein
Lhx1
UniPROBE Accession Number
UP00262
Species
Mus musculus
Domain
Homeobox
Uniprot
P63006
Name and Synonyms
LIM homeobox protein 1
Homeobox protein Lim-1, LIM/homeobox protein Lhx1, Lim1, Lim-1
IHOP
122518
Description
None Available
RefSeq
NP_032524
Lhx1 DNA binding domain
1   RGPRTTIKAK QLETLKAAFA ATPKPTRHIR EQLAQETGLN MRVIQVWFQN
51  RRSKERR
JASPAR
None Available
-PBM Motif Data for Lhx1
Primary Motif  (Seed-and-Wobble)
Image Not Available. We apologize for the inconvenience.
Primary PWM
View       Save
Top Kmer
TTAATTAA (E.S. 0.49925)
TTAATTAA (E.S. 0.49925)
Primary Motif  (BEEML-PBM)
Image Not Available. We apologize for the inconvenience.
Primary PWM
View
Consensus
NNNYHATTAN
NTAATDRNNN
Downloads
Download the zip of all Lhx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Lhx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=262&sourceDB=uniprobe
-Lhx1 Datasets
Clone ID Expression Expression Method Save View
pTH2240 #1 E. coli save search
Clone pTH2240 insert sequence
1   EGGSNENDDQ NLGAKRRGPR TTIKAKQLET LKAAFAATPK PTRHIREQLA
51  QETGLNMRVI QVWFQNRRSK ERRMKQLSAL GARRHAFFRS PRR
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


Supported Browsers:IE 7.0.6001.18000, Firefox 3.5.11, Google Chrome 5.0.375.125 beta