-Genomic Data Links
Protein
Otx2
UniPROBE Accession Number
UP00267
Species
Mus musculus
Domain
Homeobox
Uniprot
P80206
Name and Synonyms
orthodenticle homolog 2 (Drosophila)
Homeobox protein OTX2, Otx-2
IHOP
123363
Description
None Available
RefSeq
NP_659090
Otx2 DNA binding domain
1   RRERTTFTRA QLDVLEALFA KTRYPDIFMR EEVALKINLP ESRVQVWFKN
51  RRAKCRQ
JASPAR
None Available
-PBM Motif Data for Otx2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GGGATTAA (E.S. 0.49757)
TTAATCCC (E.S. 0.49757)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNRDMTTANN
NNTAAKHYNN
Downloads
Download the zip of all Otx2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Otx2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=267&sourceDB=uniprobe
-Otx2 Datasets
Clone ID Expression Expression Method Save View
pTH3441 #1 IVT save search
Clone pTH3441 insert sequence
1   DLLHPSVGYP ATPRKQRRER TTFTRAQLDV LEALFAKTRY PDIFMREEVA
51  LKINLPESRV QVWFKNRRAK CRQQQQQQQN GGQNKVRPAK KKS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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