Protein Details

-Genomic Data for RPN4				Links
Protein RPN4	UniPROBE Accession Number UP00272	Species Saccharomyces cerevisiae	Domain zf-C2H2	Uniprot Q03465
Synonyms 26S proteasome regulatory subunit RPN4, D2840, Nuclear protein SON1, SON1, UB fusion degradation protein 5, UFD5, YDL020C				IHOP 31990
				RefSeq NP_010264
Description Transcription factor that stimulates expression of proteasome genes; Rpn4p levels are in turn regulated by the 26S proteasome in a negative feedback control mechanism; RPN4 is transcriptionally reg...				SGD YDL020C

-PBM Motif Data
Primary Motif (Seed-and-Wobble)				Primary PWM View Save
Primary Motif (Seed-and-Wobble)				Top Kmer CGCCACCC E.S. 0.466 GGGTGGCG E.S. 0.466
Primary Motif (BEEML-PBM) (AMADID # 015681)				Primary PWM View
Primary Motif (BEEML-PBM) (AMADID # 015681)				Consensus NNNNNNNNNV BNNNNNNNNN
Primary Motif (BEEML-PBM) (AMADID # 016060)				Primary PWM View
Primary Motif (BEEML-PBM) (AMADID # 016060)				Consensus RNNNNNNNNN NNNNNNNNNY
Downloads Download the zip of all Rpn4 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Rpn4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID272&sourceDB=uniprobe

-Annotations
Target Gene Functional Category Enrichment 1) FunSpec analysis run with p<0.005 without Bonferroni correction (view) 2) FunSpec analysis run with p<0.05 with Bonferroni correction (view)
Conditional Specificity 1) Specific conditions (view) 2) Condition categories (view)

-RPN4 Datasets
Clone ID	Clone Type	Last Modified	Save	View
y1010	Full length clone	2014-07-16
Insert sequence 1 MASTELSLKR TLTDILEDEL YHTNPGHSQF TSHYQNYHPN ASITPYKLVN 51 KNKENNTFTW NHSLQHQNES SAASIPPQQT YHFPIFNKYA DPTLTTTTSF 101 TTSEATANDR QINNVHLIPN EIKGASETPL QKTVNLKNIM KVSDPYVPTR 151 NTFNYDVKIS NDFFDNGDNL YGNDEEVLFY EDNYNPKMQW SLQDNSAAIN 201 NEDARAIFNN EFDSDDDDIS DDEEDEIEEN YLQQEQHQEE PLLSLDVTPI 251 SMFGSDQKTG RAKSSSHLFN EYSYVDSNMD SISSVVSEDL LDERGHEKIE 301 DEDEDNDLDE DDIYDISLLK NRRKQSFVLN KNTIDFERFP SPSTSANVPS 351 TATTGKRKPA KSSSNRSCVS NSNENGTLER IKKPTSAVVS SNASRRKLIN 401 YTKKHLSSHS STNSNSKPST ASPSAHTSSS DGNNEIFTCQ IMNLITNEPC 451 GAQFSRSYDL TRHQNTIHAK RKIVFRCSEC IKILGSEGYQ KTFSRLDALT 501 RHIKSKHEDL SLEQRQEVTK FAKANIGYVM G