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| -Genomic Data for RAP1 |
Links |
- Protein
- RAP1
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- UniPROBE Accession Number
- UP00321
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- Species
- Saccharomyces cerevisiae
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- Domain
- Myb
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- Uniprot
- P11938
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- Synonyms
- "DNA-binding protein RAP1, GRF1, N1310, Repressor/activator site-binding protein, SBF-E, TBA1, TUF, TUF1, YNL216W"
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- IHOP
- 35577
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- RefSeq
- NP_014183
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- Description
- "DNA-binding protein involved in either activation or repression of transcription, depending on binding site context; also binds telomere sequences and plays a role in telomeric position effect (sil..."
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- SGD
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YNL216W
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| -PBM Motif Data |
- Primary Motif (Seed-and-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GGGTGTAC E.S. 0.485
GTACACCC E.S. 0.485
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- Primary Motif (BEEML-PBM) (AMADID # 015681)
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- Primary PWM
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View
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- Consensus
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NNRNNNNGGA
TCCNNNNYNN
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- Primary Motif (BEEML-PBM) (AMADID # 016060)
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- Primary PWM
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View
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- Consensus
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DGRKGYWNBG
CVNWRCMYCH
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- Downloads
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Download the
zip
of all Rap1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Rap1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID321&sourceDB=uniprobe
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| -Annotations |
- Target Gene Functional Category Enrichment
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1) FunSpec analysis run with p<0.005 without Bonferroni correction
(view)
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2) FunSpec analysis run with p<0.05 with Bonferroni correction
(view)
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- Conditional Specificity
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1) Specific conditions (view)
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2) Condition categories (view)
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| -RAP1 Datasets |
| Clone ID |
Clone Type |
Last Modified |
Save |
View |
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y1125
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Full length clone |
2014-07-16 |
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- Insert sequence
- 1 MSSPDDFETA PAEYVDALDP SMVVVDSGSA AVTAPSDSAA EVKANQNEEN
51 TGATAAETSE KVDQTEVEKK DDDDTTEVGV TTTTPSIADT AATANIASTS
101 GASVTEPTTD DTAADEKKEQ VSGPPLSNMK FYLNRDADAH DSLNDIDQLA
151 RLIRANGGEV LDSKPRESKE NVFIVSPYNH TNLPTVTPTY IKACCQSNSL
201 LNMENYLVPY DNFREVVDSR LQEESHSNGV DNSNSNSDNK DSIRPKTEII
251 STNTNGATED STSEKVMVDA EQQARLQEQA QLLRQHVSST ASITSGGHND
301 LVQIEQPQKD TSNNNNSNVN DEDNDLLTQD NNPQTADEGN ASFQAQRSMI
351 SRGALPSHNK ASFTDEEDEF ILDVVRKNPT RRTTHTLYDE ISHYVPNHTG
401 NSIRHRFRVY LSKRLEYVYE VDKFGKLVRD DDGNLIKTKV LPPSIKRKFS
451 ADEDYTLAIA VKKQFYRDLF QIDPDTGRSL ITDEDTPTAI ARRNMTMDPN
501 HVPGSEPNFA AYRTQSRRGP IAREFFKHFA EEHAAHTENA WRDRFRKFLL
551 AYGIDDYISY YEAEKAQNRE PEPMKNLTNR PKRPGVPTPG NYNSAAKRAR
601 NYSSQRNVQP TANAASANAA AAAAAAASNS YAIPENELLD EDTMNFISSL
651 KNDLSNISNS LPFEYPHEIA EAIRSDFSNE DIYDNIDPDT ISFPPKIATT
701 DLFLPLFFHF GSTRQFMDKL HEVISGDYEP SQAEKLVQDL CDETGIRKNF
751 STSILTCLSG DLMVFPRYFL NMFKDNVNPP PNVPGIWTHD DDESLKSNDQ
801 EQIRKLVKKH GTGRMEMRKR FFEKDLL
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