Protein Details

-Genomic Data for PHD1				Links
Protein PHD1	UniPROBE Accession Number UP00351	Species Saccharomyces cerevisiae	Domain HTH APSES-type	Uniprot P36093
Synonyms Putative transcription factor PHD1, YKL043W, YKL256				IHOP 34044
				RefSeq NP_012881
Description Transcriptional activator that enhances pseudohyphal growth; regulates expression of FLO11, an adhesin required for pseudohyphal filament formation; similar to StuA, an A. nidulans developmental re..				SGD YKL043W

-PBM Motif Data
Primary Motif (Seed-and-Wobble)				Primary PWM View Save
Primary Motif (Seed-and-Wobble)				Top Kmer CATGCAT.A E.S. 0.494 T.ATGCATG E.S. 0.494
Primary Motif (BEEML-PBM) (AMADID # 015681)				Primary PWM View
Primary Motif (BEEML-PBM) (AMADID # 015681)				Consensus NBMTGCANNN NNNTGCAKVN
Downloads Download the zip of all Phd1 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Phd1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID351&sourceDB=uniprobe

-Annotations
Target Gene Functional Category Enrichment 1) FunSpec analysis run with p<0.005 without Bonferroni correction (view) 2) FunSpec analysis run with p<0.05 with Bonferroni correction (view)
Conditional Specificity 1) Specific conditions (view) 2) Condition categories (view)

-PHD1 Datasets
Clone ID	Clone Type	Last Modified	Save	View
y1008	Full length clone	2014-07-16
Insert sequence `1 MYHVPEMRLH YPLVNTQSNA AITPTRSYDN TLPSFNELSH QSTINLPFVQ 51 RETPNAYANV AQLATSPTQA KSGYYCRYYA VPFPTYPQQP QSPYQQAVLP 101 YATIPNSNFQ PSSFPVMAVM PPEVQFDGSF LNTLHPHTEL PPIIQNTNDT 151 SVARPNNLKS IAAASPTVTA TTRTPGVSST SVLKPRVITT MWEDENTICY 201 QVEANGISVV RRADNNMING TKLLNVTKMT RGRRDGILRS EKVREVVKIG 251 SMHLKGVWIP FERAYILAQR EQILDHLYPL FVKDIESIVD ARKPSNKASL 301 TPKSSPAPIK QEPSDNKHEI ATEIKPKSID ALSNGASTQG AGELPHLKIN 351 HIDTEAQTSR AKNELS`