-Genomic Data Links
Protein
Smad3
UniPROBE Accession Number
UP00000
Species
Mus musculus
Domain
DWA
Name and Synonyms
MAD homolog 3 (Drosophila)
AU022421, Mad3, Madh3, mMad3, Mothers against decapentaplegic homolog 3, Mothers against DPP homolog 3, Smad 3, SMAD 3
Description
None Available
-PBM Motif Data for Smad3
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
A.CCAGACA E.S. 0.493
TGTCTGG.T E.S. 0.493
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
CCCGCCA..C E.S. 0.480
G..TGGCGGG E.S. 0.480
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3805)
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PWM
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Consensus
NHGTCTVNNN
NNNBAGACDN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3805)
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PWM
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Consensus
NNCMAANNNN
NNNNTTKGNN
Downloads
Download the zip of all Smad3 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Smad3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=0&sourceDB=uniprobe

-Smad3 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3805 #1 AMADID #015681 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3805 #1 AMADID #016060 E. coli DNA binding domain only 2014-08-13 save search
Clone pTH3805 insert sequence
1    IVKRLLGWKK GEQNGQEEKW CEKAVKSLVK KLKKTGQLDE LEKAITTQNV
51   NTKCITIPRS LDGRLQVSHR KGLPHVIYCR LWRWPDLHSH HELRAMELCE
101  FAFNMKKDEV CVNPYHYQRV ETPVLPPVLV PRHTEIPAE

DNA Binding Domains (Pfam) for clone 3805
Region 18..121
1    EKWCEKAVKS LVKKLKKTGQ LDELEKAITT QNVNTKCITI PRSLDGRLQV
51   SHRKGLPHVI YCRLWRWPDL HSHHELRAME LCEFAFNMKK DEVCVNPYHY
101  QRVE
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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