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| -Genomic Data |
Links |
- Protein
- Tcfap2b
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- UniPROBE Accession Number
- UP00010
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- Species
- Mus musculus
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- Domain
- AP-2
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- Uniprot
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Q61313
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- Name and Synonyms
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transcription factor AP-2 beta
Activating enhancer-binding protein 2 beta, AI606113, AP-2(beta), AP2-beta, E130018K07Rik, Tfap2b, Transcription factor AP-2 beta
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- IHOP
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125390
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- RefSeq
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NP_001020476
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- Description
- None Available
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- JASPAR
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N/A
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| -PBM Motif Data for Tcfap2b |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GCCC..GGGC E.S. 0.497
GCCC..GGGC E.S. 0.497
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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GCC.C.GGCA E.S. 0.489
TGCC.G.GGC E.S. 0.489
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3988)
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- PWM
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View
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- Consensus
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NGCCBBVRGS
SCYBVVGGCN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3988)
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- PWM
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View
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- Consensus
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HGCCBBVGGS
SCCBVVGGCD
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- Downloads
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Download the
zip
of all Tcfap2b PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Tcfap2b
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=10&sourceDB=uniprobe
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| -Tcfap2b Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3988 |
#1 |
AMADID #016060 |
IVT |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3988 |
#1 |
AMADID #015681 |
IVT |
DNA binding domain only |
2014-08-13 |
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- Clone pTH3988 insert sequence
- 1 LMMNKDGFLG GMSVNTGEVF CSVPGRLSLL SSTSKYKVTV GEVQRRLSPP
51 ECLNASLLGG VLRRAKSKNG GRSLRERLEK IGLNLPAGRR KAANVTLLTS
101 LVEGEAVHLA RDFGYICETE FPAKAVSEYL NRQHTDPSDL HSRKNMLLAT
151 KQLCKEFTDL LAQDRTPIGN SRPSPILEPG IQSCLTHFSL ITHGFGAPAI
201 CAALTALQNY LTEALKGMDK MFLNNTTNRH TSGEGPGS
- DNA Binding Domains (Pfam) for clone 3988
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Region 16..223
1 TGEVFCSVPG RLSLLSSTSK YKVTVGEVQR RLSPPECLNA SLLGGVLRRA
51 KSKNGGRSLR ERLEKIGLNL PAGRRKAANV TLLTSLVEGE AVHLARDFGY
101 ICETEFPAKA VSEYLNRQHT DPSDLHSRKN MLLATKQLCK EFTDLLAQDR
151 TPIGNSRPSP ILEPGIQSCL THFSLITHGF GAPAICAALT ALQNYLTEAL
201 KGMDKMFL
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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