|
-Genomic Data |
Links |
- Protein
- Zic1
|
- UniPROBE Accession Number
- UP00102
|
- Species
- Mus musculus
|
- Domain
- zf-C2H2
|
- Uniprot
-
P46684
|
- Name and Synonyms
-
Zinc finger protein of the cerebellum 1
odd-paired homolog, Zic, ZIC, Zinc finger protein of the cerebellum 1, Zinc finger protein ZIC 1, ZNF201
|
- IHOP
-
126078
|
- RefSeq
-
NP_033599
|
- Description
- Mus musculus similar to zic protein member 1 (Zic1), mRNA
|
- JASPAR
-
N/A
|
-PBM Motif Data for Zic1 |
- Primary Motif (Seed-And-Wobble)
-
|
- Primary PWM
-
View
 
Save
|
- Top Kmer
-
CCCC..GGGG E.S. 0.495
CCCC..GGGG E.S. 0.495
|
- Secondary Motif (Seed-And-Wobble)
-
|
- Secondary PWM
-
View
Save
|
- Top Kmer
-
C.CAGCAGG E.S. 0.493
CCTGCTG.G E.S. 0.493
|
-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH0991)
-
|
- PWM
-
View
|
- Consensus
-
NCMYVBNGNK
MNCNVBRKGN
|
-
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH0991)
-
|
- PWM
-
View
|
- Consensus
-
VNYNRBRKGN
NCMYVYNRNB
|
- Downloads
-
Download the
zip
of all Zic1 PBM files
or view the
downloads directory
for individual files.
|
- Link to TFBSshape
-
This link will take you to the corresponding entry for Zic1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=102&sourceDB=uniprobe
|
-Zic1 Datasets |
Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
pTH991 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
|
|
Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
pTH991 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
|
|
- Clone pTH991 insert sequence
- 1 QELICKWIEP EQLANPKKSC NKTFSTMHEL VTHVTVEHVG GPEQSNHICF
51 WEECPREGKP FKAKYKLVNH IRVHTGEKPF PCPFPGCGKV FARSENLKIH 101 KRTHTGEKPF KCEFEGCDRR FANSSDRKKH MHVHTSDKPY LCKMCDKSYT 151 HPSSLRKHMK VHESPSQGSQ PSPAASSG
- DNA Binding Domains (Pfam) for clone 991
-
Region 80..104
1 FPCPFPGCGK VFARSENLKI HKRTH
-
-
Region 110..134
1 FKCEFEGCDR RFANSSDRKK HMHVH
-
Region 140..162
1 YLCKMCDKSY THPSSLRKHM KVH
|
- References
-
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
|
|