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| -Genomic Data |
Links |
- Protein
- Zic1
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- UniPROBE Accession Number
- UP00102
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- Species
- Mus musculus
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- Domain
- zf-C2H2
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- Uniprot
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P46684
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- Name and Synonyms
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Zinc finger protein of the cerebellum 1
odd-paired homolog, Zic, ZIC, Zinc finger protein of the cerebellum 1, Zinc finger protein ZIC 1, ZNF201
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- IHOP
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126078
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- RefSeq
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NP_033599
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- Description
- Mus musculus similar to zic protein member 1 (Zic1), mRNA
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- JASPAR
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N/A
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| -PBM Motif Data for Zic1 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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CCCC..GGGG E.S. 0.495
CCCC..GGGG E.S. 0.495
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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C.CAGCAGG E.S. 0.493
CCTGCTG.G E.S. 0.493
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH0991)
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- PWM
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View
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- Consensus
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NCMYVBNGNK
MNCNVBRKGN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH0991)
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- PWM
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View
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- Consensus
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VNYNRBRKGN
NCMYVYNRNB
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- Downloads
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Download the
zip
of all Zic1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Zic1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=102&sourceDB=uniprobe
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| -Zic1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH991 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH991 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH991 insert sequence
- 1 QELICKWIEP EQLANPKKSC NKTFSTMHEL VTHVTVEHVG GPEQSNHICF
51 WEECPREGKP FKAKYKLVNH IRVHTGEKPF PCPFPGCGKV FARSENLKIH
101 KRTHTGEKPF KCEFEGCDRR FANSSDRKKH MHVHTSDKPY LCKMCDKSYT
151 HPSSLRKHMK VHESPSQGSQ PSPAASSG
- DNA Binding Domains (Pfam) for clone 991
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Region 80..104
1 FPCPFPGCGK VFARSENLKI HKRTH
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Region 110..134
1 FKCEFEGCDR RFANSSDRKK HMHVH
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Region 140..162
1 YLCKMCDKSY THPSSLRKHM KVH
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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