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| -Genomic Data |
Links |
- Protein
- Gabpa
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- UniPROBE Accession Number
- UP00013
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- Species
- Mus musculus
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- Domain
- ETS
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- Uniprot
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Q00422
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- Name and Synonyms
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GA repeat binding protein, alpha
E4tf1a, GA-binding protein alpha chain, GABP-alpha subunit
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- IHOP
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121149
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- RefSeq
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NP_032091
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- Description
- Mus musculus GA repeat binding protein, alpha
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- JASPAR
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MA0062
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| -PBM Motif Data for Gabpa |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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ACCGGAAG E.S. 0.498
CTTCCGGT E.S. 0.498
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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CTTCC.CC.C E.S. 0.446
G.GG.GGAAG E.S. 0.446
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2829)
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- PWM
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View
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- Consensus
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RYTTCCGBYN
NRVCGGAARY
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2829)
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- PWM
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View
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- Consensus
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RYTTCCGGYN
NRCCGGAARY
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- Downloads
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Download the
zip
of all Gabpa PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Gabpa
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=13&sourceDB=uniprobe
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| -Gabpa Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2829 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2829 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH2829 insert sequence
- 1 GEDRSSPGNR TGNNGQIQLW QFLLELLTDK DARDCISWVG DEGEFKLNQP
51 ELVAQKWGQR KNKPTMNYEK LSRALRYYYD GDMICKVQGK RFVYKFVCDL
101 KTLIGYSAAE LNRLVI
- DNA Binding Domains (Pfam) for clone 2829
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Region 16..99
1 QIQLWQFLLE LLTDKDARDC ISWVGDEGEF KLNQPELVAQ KWGQRKNKPT
51 MNYEKLSRAL RYYYDGDMIC KVQGKRFVYK FVCD
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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