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| -Genomic Data |
Links |
- Protein
- Nkx3-1
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- UniPROBE Accession Number
- UP00017
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- Species
- Mus musculus
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- Domain
- Homeobox
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- Uniprot
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P97436
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- Name and Synonyms
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NK-3 transcription factor, locus 1 (Drosophila)
bagpipe, Bax, Homeobox protein Nkx-3.1, NKX3.1, Nkx-3.1, Nkx3a, NKX3A
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- IHOP
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123148
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- RefSeq
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NP_035051
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- Description
- Mus musculus homeobox-containing protein Nkx-3.1 mRNA
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- JASPAR
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None Available
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| -PBM Motif Data for Nkx3-1 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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CCACTTAA E.S. 0.498
TTAAGTGG E.S. 0.498
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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AAGTACTT E.S. 0.496
AAGTACTT E.S. 0.496
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2923)
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- PWM
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View
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- Consensus
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NNVYACTTNN
NNAAGTRBNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2923)
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- PWM
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View
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- Consensus
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NNVYACTTHN
NDAAGTRBNN
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- Downloads
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Download the
zip
of all Nkx3-1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Nkx3-1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=17&sourceDB=uniprobe
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| -Nkx3-1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2923 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-22 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2923 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-22 |
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- Clone pTH2923 insert sequence
- 1 NPGDLASAPQ VTKQPQKRSR AAFSHTQVIE LERKFSHQKY LSAPERAHLA
51 KNLKLTETQV KIWFQNRRYK TKRKQLSEDL GVLEKNSPLS LPA
- DNA Binding Domains (Pfam) for clone 2923
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Region 17..73
1 KRSRAAFSHT QVIELERKFS HQKYLSAPER AHLAKNLKLT ETQVKIWFQN
51 RRYKTKR
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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