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| -Genomic Data |
Links |
- Protein
- Sp4
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- UniPROBE Accession Number
- UP00002
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- Species
- Mus musculus
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- Domain
- zf-C2H2
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- Uniprot
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Q62445
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- Name and Synonyms
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trans-acting transcription factor 4
5730497N03Rik, HF1-b, HF-1b, Transcription factor Sp4
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- IHOP
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124793
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- RefSeq
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NP_033265
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- Description
- Mus musculus similar to trans-acting transcription factor 4 (LOC211769), mRNA
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- JASPAR
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N/A
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| -PBM Motif Data for Sp4 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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CCGCCCCC E.S. 0.498
GGGGGCGG E.S. 0.498
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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AGGCGTG.C E.S. 0.488
G.CACGCCT E.S. 0.488
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH1011)
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- PWM
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View
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- Consensus
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NMCGCCCMYN
NRKGGGCGKN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH1011)
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- PWM
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View
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- Consensus
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NHCCWCGHMH
DKDCGWGGDN
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- Downloads
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Download the
zip
of all Sp4 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Sp4
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=2&sourceDB=uniprobe
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| -Sp4 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH1011 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH1011 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH1011 insert sequence
- 1 EGEGRGSSEP GKKKQHVCHI EGCGKVYGKT SHLRAHLRWH TGERPFICNW
51 MFCGKRFTRS DELQRHRRTH TGEKRFECPE CSKRFMRSDH LSKHVKTHQN
101 KKGGGTALAI VTS
- DNA Binding Domains (Pfam) for clone 1011
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Region 16..40
1 HVCHIEGCGK VYGKTSHLRA HLRWH
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Region 46..70
1 FICNWMFCGK RFTRSDELQR HRRTH
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Region 76..98
1 FECPECSKRF MRSDHLSKHV KTH
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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