Protein Details

-Genomic Data				Links
Protein Sox30	UniPROBE Accession Number UP00023	Species Mus musculus	Domain HMG_box	Uniprot Q8CGW4
Name and Synonyms SRY-box containing gene 30 Transcription factor SOX-30				IHOP 151888
				RefSeq NP_775560
Description Mus musculus SRY-box containing gene 30 (Sox30)				JASPAR N/A

-PBM Motif Data for Sox30
Primary Motif (Seed-And-Wobble)				Primary PWM View Save
Primary Motif (Seed-And-Wobble)				Top Kmer A.AACAAT.G E.S. 0.485 C.ATTGTT.T E.S. 0.485
Secondary Motif (Seed-And-Wobble)				Secondary PWM View Save
Secondary Motif (Seed-And-Wobble)				Top Kmer ATTATAAT E.S. 0.462 ATTATAAT E.S. 0.462
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH2781)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH2781)				Consensus NNNNVAYAAT ATTRTBNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2781)				PWM View
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2781)				Consensus NNNNNAYAAT ATTRTNNNNN
Downloads Download the zip of all Sox30 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Sox30 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=23&sourceDB=uniprobe

-Sox30 Datasets
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH2781	#1	AMADID #016060	E. coli	DNA binding domain only	2014-08-13
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH2781	#1	AMADID #015681	E. coli	DNA binding domain only	2014-08-13
Clone pTH2781 insert sequence `1 DAGIPDTPFS KDRNGHVKRP MNAFMVWARI HRPALAKANP AANNAEISVQ 51 LGLEWNKLSE EQKKPYYDEA QKIKEKHREE FPGWVYQPRP GKRKRFPLSV 101 S` DNA Binding Domains (Pfam) for clone 2781 Region 17..85 `1 VKRPMNAFMV WARIHRPALA KANPAANNAE ISVQLGLEWN KLSEEQKKPY 51 YDEAQKIKEK HREEFPGWV`
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`