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| -Genomic Data |
Links |
- Protein
- Osr1
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- UniPROBE Accession Number
- UP00027
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- Species
- Mus musculus
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- Domain
- zf-C2H2
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- Uniprot
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Q9WVG7
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- Name and Synonyms
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odd-skipped related 1 (Drosophila)
Odd1, Osr, Protein odd-skipped-related 1
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- IHOP
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126213
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- RefSeq
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NP_035989
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- Description
- Mus musculus HCM5520 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence
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- JASPAR
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N/A
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| -PBM Motif Data for Osr1 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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ACAGTAGC E.S. 0.498
GCTACTGT E.S. 0.498
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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GCTACCTA E.S. 0.436
TAGGTAGC E.S. 0.436
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3033)
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- PWM
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View
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- Consensus
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NNMRGWAGYN
NRCTWCYKNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3033)
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- PWM
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View
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- Consensus
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NMRGWAGBNN
NNVCTWCYKN
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- Downloads
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Download the
zip
of all Osr1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Osr1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=27&sourceDB=uniprobe
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| -Osr1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3033 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3033 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH3033 insert sequence
- 1 KKPTRGRLPS KTKKEFVCKF CGRHFTKSYN LLIHERTHTD ERPYTCDICH
51 KAFRRQDHLR DHRYIHSKEK PFKCQECGKG FCQSRTLAVH KTLHSQVKEL
101 KTSKIKC
- DNA Binding Domains (Pfam) for clone 3033
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Region 16..38
1 FVCKFCGRHF TKSYNLLIHE RTH
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Region 44..66
1 YTCDICHKAF RRQDHLRDHR YIH
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Region 72..94
1 FKCQECGKGF CQSRTLAVHK TLH
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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