-Genomic Data Links
Protein
Osr1
UniPROBE Accession Number
UP00027
Species
Mus musculus
Domain
zf-C2H2
Name and Synonyms
odd-skipped related 1 (Drosophila)
Odd1, Osr, Protein odd-skipped-related 1
Description
Mus musculus HCM5520 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence
-PBM Motif Data for Osr1
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
ACAGTAGC E.S. 0.498
GCTACTGT E.S. 0.498
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
GCTACCTA E.S. 0.436
TAGGTAGC E.S. 0.436
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3033)
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PWM
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Consensus
NNMRGWAGYN
NRCTWCYKNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3033)
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PWM
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Consensus
NMRGWAGBNN
NNVCTWCYKN
Downloads
Download the zip of all Osr1 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Osr1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=27&sourceDB=uniprobe

-Osr1 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3033 #1 AMADID #016060 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3033 #1 AMADID #015681 E. coli DNA binding domain only 2014-08-13 save search
Clone pTH3033 insert sequence
1    KKPTRGRLPS KTKKEFVCKF CGRHFTKSYN LLIHERTHTD ERPYTCDICH
51   KAFRRQDHLR DHRYIHSKEK PFKCQECGKG FCQSRTLAVH KTLHSQVKEL
101  KTSKIKC

DNA Binding Domains (Pfam) for clone 3033
Region 16..38
1   FVCKFCGRHF TKSYNLLIHE RTH

Region 44..66
1   YTCDICHKAF RRQDHLRDHR YIH

Region 72..94
1   FKCQECGKGF CQSRTLAVHK TLH
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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