-Genomic Data Links
Protein
Gata3
UniPROBE Accession Number
UP00032
Species
Mus musculus
Domain
GATA
Uniprot
P23772
Name and Synonyms
GATA binding protein 3
Gata-3, GATA-binding factor 3, Trans-acting T-cell-specific transcription factor GATA-3
IHOP
121194
RefSeq
NP_032117
Description
Mus musculus GATA binding protein 3 (Gata3), mRNA.
JASPAR
MA0037
-PBM Motif Data for Gata3
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
AGATAAGA E.S. 0.496
TCTTATCT E.S. 0.496
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
AGAT..TATC E.S. 0.483
GATA..ATCT E.S. 0.483
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH1024)
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PWM
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Consensus
NNHGATHNNN
NNNDATCDNN
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH4964)
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PWM
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Consensus
NNNHGATHNN
NNDATCDNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH4964)
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PWM
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Consensus
NNNDATCDNN
NNHGATHNNN
Downloads
Download the zip of all Gata3 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Gata3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=32&sourceDB=uniprobe

-Gata3 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH1024 #1 AMADID #016060 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH1024 #1 AMADID #015681 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH4964 #1 AMADID #016060 IVT Full length clone 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH4964 #1 AMADID #015681 IVT Full length clone 2014-08-13 save search
Clone pTH1024 insert sequence
1    SPTGFGCKSR PKARSSTEGR ECVNCGATST PLWRRDGTGH YLCNACGLYH
51   KMNGQNRPLI KPKRRLSAAR RAGTSCANCQ TTTTTLWRRN ANGDPVCNAC
101  GLYYKLHNIN RPLTMKKEGI QTRNRKMSSK SKKCK

DNA Binding Domains (Pfam) for clone 1024
Region 22..56
1   CVNCGATSTP LWRRDGTGHY LCNACGLYHK MNGQN

Region 76..110
1   CANCQTTTTT LWRRNANGDP VCNACGLYYK LHNIN
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


Clone pTH4964 insert sequence
1    MEVTADQPRW VSHHHPAVLN GQHPDTHHPG LSHSYMDAAQ YPLPEEVDVL
51   FNIDGQGNHV PPYYGNSVRA TVQRYPPTHH GSQVCRPPLL HGSLPWLDGG
101  KALGSHHTAS PWNLSPFSKT SIHHGSPGPL SVYPPASSSS LSGGHASPHL
151  FTFPPTPPKD VSPDPSLSTP GSAGSARQDE KECLKYQVPL PDSMKLESSH
201  SRGSMTALGG ASSSTHHPIT TYPPYVPEYS SGLFPPSSLL GGSPTGFGCK
251  SRPKARSSTE GRECVNCGAT STPLWRRDGT GHYLCNACGL YHKMNGQNRP
301  LIKPKRRLSA ARRAGTSCAN CQTTTTTLWR RNANGDPVCN ACGLYYKLHN
351  INRPLTMKKE GIQTRNRKMS SKSKKCKKVH DSLEDFPKNS SFNPAALSRH
401  MSSLSHISPF SHSSHMLTTP TPMHPPSSLS FGPHHPSSMV TAMG

DNA Binding Domains (Pfam) for clone 4964
Not Available
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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