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| -Genomic Data |
Links |
- Protein
- Zfp410
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- UniPROBE Accession Number
- UP00033
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- Species
- Mus musculus
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- Domain
- zf-C2H2
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- Uniprot
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Q8BKX7
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- Name and Synonyms
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zinc finger protein 410
Another partner for ARF 1, Apa1, D12Ertd748e, MGC38535, Zinc finger protein 410, Zinc finger protein APA-1, Znf410
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- IHOP
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128181
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- RefSeq
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NP_659082
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- Description
- Mus musculus HCM3688 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence
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- JASPAR
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N/A
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| -PBM Motif Data for Zfp410 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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ATGGGATG E.S. 0.498
CATCCCAT E.S. 0.498
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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CCGCCCC..A E.S. 0.422
T..GGGGCGG E.S. 0.422
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3034)
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- PWM
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View
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- Consensus
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NMTGGGRTGK
MCAYCCCAKN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3034)
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- PWM
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View
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- Consensus
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NNNNNNNNNN
NNNNNNNNNN
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- Downloads
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Download the
zip
of all Zfp410 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Zfp410
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=33&sourceDB=uniprobe
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| -Zfp410 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3034 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3034 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH3034 insert sequence
- 1 GQPKDSGPLP QAEKKLKCTV EGCDRTFVWP AHFKYHLKTH RNERSFICPA
51 EGCGKSFYVL QRLKVHMRTH NGEKPFMCHE SGCGKQFTTA GNLKNHRRIH
101 TGEKPFLCEA QGCGRSFAEY SSLRKHLVVH SGEKPHQCQV CGKTFSQSGS
151 RNVHMRKHHL QLGTTGSQEQ DQT
- DNA Binding Domains (Pfam) for clone 3034
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Region 16..40
1 LKCTVEGCDR TFVWPAHFKY HLKTH
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Region 46..70
1 FICPAEGCGK SFYVLQRLKV HMRTH
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Region 76..100
1 FMCHESGCGK QFTTAGNLKN HRRIH
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Region 106..130
1 FLCEAQGCGR SFAEYSSLRK HLVVH
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Region 136..158
1 HQCQVCGKTF SQSGSRNVHM RKH
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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