-Genomic Data Links
Protein
Sox7
UniPROBE Accession Number
UP00034
Species
Mus musculus
Domain
HMG_box
Uniprot
P40646
Name and Synonyms
SRY-box containing gene 7
mSOX7, Sox-7, Transcription factor SOX-7
IHOP
124785
RefSeq
NP_035576
Description
None Available
JASPAR
N/A
-PBM Motif Data for Sox7
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
AACAATAG E.S. 0.487
CTATTGTT E.S. 0.487
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
ATTGT.TG.G E.S. 0.467
C.CA.ACAAT E.S. 0.467
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3460)
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PWM
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Consensus
NNNNNWBAAT
ATTVWNNNNN
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH4972)
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PWM
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Consensus
NNNNNWBAAT
ATTVWNNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH4972)
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PWM
View
Consensus
ATTVWNNNNN
NNNNNWBAAT
Downloads
Download the zip of all Sox7 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Sox7 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=34&sourceDB=uniprobe

-Sox7 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3460 #1 AMADID #015681 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3460 #1 AMADID #016060 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH4972 #1 AMADID #016060 IVT Full length clone 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH4972 #1 AMADID #015681 IVT Full length clone 2014-08-13 save search
Clone pTH3460 insert sequence
1    PPAVPRPSGD KSSESRIRRP MNAFMVWAKD ERKRLAVQNP DLHNAELSKM
51   LGKSWKALTL SQKRPYVDEA ERLRLQHMQD YPNYKYRPRR KKQGKRLCKR
101  V

DNA Binding Domains (Pfam) for clone 3460
Region 17..85
1   IRRPMNAFMV WAKDERKRLA VQNPDLHNAE LSKMLGKSWK ALTLSQKRPY
51  VDEAERLRLQ HMQDYPNYK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


Clone pTH4972 insert sequence
1    MASLLGAYPW PEGLECPALD AELSDGQSPP AVPRPPGDKG SESRIRRPMN
51   AFMVWAKDER KRLAVQNPDL HNAELSKMLG KSWKALTLSQ KRPYVDEAER
101  LRLQHMQDYP NYKYRPRRKK QAKRLCKRVD PGFLLSSLSR DQNALPEKRS
151  GSRGALGEKE DRGEYSPGTA LPSLRGCYHE GPAGGGGGGT PSSVDTYPYG
201  LPTPPEMSPL DVLEPEQTFF SSPCQEEHGH PRRIPHLPGH PYSPEYAPSP
251  LHCSHPLGSL ALGQSPGVSM MSPVPGCPPS PAYYSPATYH PLHSNLQAHL
301  GQLSPPPEHP GFDALDQLSQ VELLGDMDRN EFDQYLNTPG HPDSATGAMA
351  LSGHVPVSQV TPTGPTETSL ISVLADATAT YYNSYSVS

DNA Binding Domains (Pfam) for clone 4972
Not Available
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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